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Presentations and Recordings

June 22 -23, 2021

Supporting  Sequelae of COVID-19

The i2b2 tranSMART Foundation, in cooperation with the Department of BioMedical Informatics (DBMI) of the Harvard University Medical School, held its Second VIRTUAL Symposium. We hope to be in person next year.  The slide decks and recordings are being posted below as they become available. We hope to have everything posted within a week or two.
Highlights can be found on twitter #i2b2tsjune2021.

Tuesday June 22nd

Welcome – Symposium overview & i2b2 tranSMART Year in Review, Diane Keogh and Isaac Kohane

Slide Deck
Session – Report from the Global Community

India: Health Platform Development using i2b2 Kavishwar Wagholikar

Slide Deck:

Africa: tranSMART impact on CKD, Louise Klann and Becky Steck

Slide Deck: Louise Klann
Slide Deck: Becky Steck
Session – Supporting COVID-19 Research

4CE Late Breaking Updates, Griffin Weber, MD PhD, Paul Avillach MD PhD, Tianxi Cai, ScD, Jeff Klann PhD

Slide Deck: Griffin Weber
Slide Deck: Jeff Klann
Slide Deck: Tianxi Cai
Slide Deck: Paul Avillach

NHLBI OTA: RECOVER – Researching COVID to Enhance Recovery, Shawn Murphy, MD PhD, Vivian Gainer, Nich Wattanasin, Victor Castro

Slide Deck

DELL Giving support for Covid-19, David Dimond

Slide Deck

tranSMART COVID – Open data, Rudy Potenzone, PhD and Peter Rice

Slide Deck

COVID Authors, Griffin Weber, MD PhD

Slide Deck

Enclave: Digital twin supporting long Covid, Shawn Murphy, MD PhD, Mike Mendis

Slide Deck
Session – Keynote

FHIR: Interop for Consumer Access, Clinical Research, and Beyond.  Josh Mandel

Slide Deck
Session – New Technologies

InterSystems IRIS: A new high performance data platform option for the i2b2 community, Qi Li, MD, Raj Singh, Anatoly Postilnik

Slide Deck: Qi Li & Raj Singh
Qi Li Recording
Raj Singh Recording
Slide Deck: Anatoly Postilnik
Anatoly Postilnik Recording

Visualizing EHR data in a Knowledge Graph, Rudy Potenzone, PhD

Slide Deck

Axiomedix Update, Jamie Cuticchia

Slide Deck
Session – Foundation Technical Session

Committee on Technology, Griffin Weber, MD PhD

Slide Deck

Dell project updates: Common Data model (i2b2 tranSMART), Clinical and Scientific Bundle, Griffin Weber MD PhD, Jeff Klann PhD

Slide Deck

Foundation Roadmaps: tranSMART roadmap, Rudy Potenzone, PhD and Peter Rice

Slide Deck

Foundation Roadmaps: i2b2 roadmap, Shawn Murphy MD PhD, Mike Mendis and Jeff Klann PhD

Slide Deck
No Recording Available

Wednesday June 23rd

Session – Foundation Working Groups
Ontology Working Groups

Membership & Activities, Jim Campbell, Matvey Palchuk & Michele Morris

Slide Deck: Jim Campbell
Slide Deck: Michele Morris

Meeting the Challenge of i2b2 ontology deployment for the COVID-19 Pandemic: Trinetx COVID-19 deployments, Matvey Palchuk

Slide Deck

Meeting the Challenge of i2b2 ontology deployment for the COVID-19 Pandemic: ACT COVID-19 Ontology, Shyam Visweswaran

Slide Deck

Meeting the Challenge of i2b2 ontology deployment for Oncology (ICD-O-3), Mary Natividad and Jim Campbell

Slide Deck
ETL Working Group

General About ETL Group and Introduction to Cancer Care Manitoba Mike Mendis and Alexander Sachs

Slide Deck

i2b2 ETL at Cancer Care Manitoba, Alexander Sachs

Slide Deck

i2b2 ETL at Cancer Care Manitoba, Jia Jun Bao and  Mary Natividad 

Slide Deck

i2b2 ETL Module, Kavishwar Wagholikar

Slide Deck

MGB Biobank Portal, Victor Castro

Slide Deck
User Interface Working Group

UI, Griffin Weber, MD Phd and Anupama Maram

Slide Deck: Griffin Weber
Slide Deck: Anupama Maram
Session – SHRINE Network

SHRINE software – history, architecture, and recent features

SHRINE Part 1
Agenda and History – Marc Ciriello and Doug MacFadden
Slide Deck -Marc Ciriello

Slide Deck – Douglas MacFadden

Architecture – Bill Simons
Slide Deck – Bill Simons
SHRINE Part 2
SHRINE 3.0 Demo and Upcoming SHRINE features for the open-source community, Anupama Maram and Griffin Weber
Slide Deck