Covid-19 Virtual Datathon – 18-20 November 2020
Informatics for Integrating Biology & the Bedside, or i2b2 is an NIH-funded enterprise clinical research platform, which contains a database model, application layer, and core APIs.

The i2b2 Software

tranSMART is a suite of data exploration, visualization, and ETL tools, which were developed by pharma for translational research studies.

The tranSMART Software

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COVID-19 4CE Consortium

Dr. Zak Kohane and several members of our Board of Directors have launched an urgent initiative with organizations around the world to rapidly collect aggregate data on hospitalized patients that are COVID-19 positive. The goal of this effort is to quickly collect data and publish the results.
Consortium for Clinical Characterization of Covid19 by EHR (4CE)

In this time of great need, the i2b2 tranSMART Foundation and the i2b2 community are working to combine national and international data for analyses of the COVID-19 affliction on our patients.

The 4CE Consortium is a globally distributed collaboration across health centers. In this first phase we are reaching out to other collaborators to join our 96 hospital collaboration who also have EHR data to share to augment the breadth and depth of the analyses we jointly work on.

Connect to 4CE

Upcoming FALL 2020 European Virtual Symposium

Our Fall 2020 Meeting of the Foundation will be virtual on 9 Nov 2020, 11AM CET to 7PM CET

The Organizing Committee has set the Preliminary Agenda. More details are available on the Meeting webpage and as we get closer, additional information will be published there.

If you have interest in presenting a Use Case at the Meeting, please use the form on the Meeting website.

See the Preliminary Agenda and information on the meeting

European User Group

FALL 2020 European Virtual Symposium

09 November 2020
906090
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COVID-19 Virtual Datathon-2020

The i2b2 tranSMART Foundation in partnership with Axiomedix and the Open Source Pharma Foundation (OSPF) are holding a Covid-19 Virtual Datathon-2020 on November 18-20, 2020.

The i2b2 tranSMART Foundation, with support from a grant from Dell Technologies, is creating a public instance of the latest version (v19.1) of the Foundation’s tranSMART software.  Hosted on AWS, tranSMART will be accessible freely with a link to an open-data collection of virus datasets, curated from GEO and other sources.  In addition, all of the additional almost 400 open tranSMART datasets may be loaded.

Data in the tranSMART Open Data Library, including data on a number of diseases areas including covid-19, may be loaded into the public tranSMART or downloaded to be used in another public or private version of tranSMART.

Visit the Virtual Datathon-2020 Webpages

Covid Datathon-2020

COVID-19 VIRTUAL DATATHON-2020

18 November 2020 - United States
1683690
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Harvard Symposium Virtual Conference

The on-site Harvard Symposium was presented on June 11-12, 2020 as a Virtual Conference. The focus was on the COVID-19 virus. We had a great conference. If you missed it or are interested in reviewing the slide decks and recordings, visit the Symposium web pages. They are partially loaded and more coming …

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Virtual Poster Session
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Diane Keogh
Executive Director
Diane.Keogh@i2b2transmart.org

From The Executive Director’s Desk

COVID-19 Action!

In this time of great need, the i2b2 community is working to combine national and international analyses of the COVID-19 affliction on our patients.

There are two major initiatives that the Foundation is participating in at this time.

Grant to the Foundation from Dell Technologies

First, we are delighted to announce that Dell Technologies has given the Foundation a significant grant to expedite three projects that are focused on COVID-19 research working towards better understanding diagnosis, treatment and prevention of the disease. The three projects will be described in detail in upcoming Community Meetings. They are:

  • Public tranSMART v19 platform running on AWS with datasets that become publicly available. This project is in collaboration with Axiomedix.
  • With the explosion of articles and research labs studying the corona virus (over 6,000 articles from 25,000 authors), a special version of Profiles is being developed by Griffin Weber and will be available publicly.
  • i2b2 and tranSMART are being synchronized to the same data model so that direct data sharing will be possible between the Foundation platforms. We will have a few use cases and sample deployments available in the coming months.

4CE Consortium

Second, I want to tell you about the 4CE Consortium that was launched by Dr. Zak Kohane and several members of our Board of Directors. This urgent initiative with organizations around the world allowed labs with i2b2 to rapidly collect aggregate data on hospitalized patients that are COVID-19 positive. Their first publication is available as a preprint (click here) and will be published soon.

i2b2 ACT COVID ontology that has been developed

An initial ACT COVID ontology has been developed by the ACT Harmonization Committee. Note: Implementing this ontology is not necessary for this initial submission, but it might be helpful for you to look at the codes it uses as you try to identify your population of COVID-19 positive patients. click here for ACT COVID ontology

More information will be published here on our website as it becomes available. Be sure to join our Community Meetings and please attend the 2020 Harvard Virtual Symposium which will include focused sessions on these and other COVID-19 related projects.

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Join us! 09 Nov 2020 European Virtual Symposium. This one-day meeting will focus on Case Studies of Covid-19 activities in Europe and the US. Free Event.
https://www.eventbrite.com/e/i2b2-transmart-2020-european-virtual-symposium-tickets-120382010835
#bioinformatics #computationalbiology #omics #OHDSI #datasharing #healthdata #COVID19

October 21, 2020 - Symposium on Artificial Intelligence for Learning Health Systems - Virtual Event
http://sail.health/presymposium.html

#AIhealthcared #AIandmedicine #machinelearning #datascience #clinicalinformatics

1ere expérience de notre équipe d’interrogation #eds @aphp
Merci à l’équipe #DSI Stéphane Breant qui a permis de passer de 😰😱🙃 à 😅😃🤓
Continuez à améliorer l’accessibilité ++ de cet outil puissant #i2b2 de recherche pour les cliniciens

October 18-21, 2020 - OHDSI Virtual Symposium - Join the global OHDSI community to collaborate on important healthcare issues. Free event - Register here https://www.ohdsi.org/2020-symposium-registration/
#clinicalresearch #datasharing #COVID19 #clinicalinformatics #translationalscience

4CE EHR data used in precision medicine AI models to accelerate research in COVID-19 drug repurposing.
https://www.thelancet.com/journals/landig/article/PIIS2589-7500(20)30192-8/fulltext
#AIhealthcared #AIandmedicine #machinelearning #datascience #clinicalinformatics #covid19

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